Operation: find 3d objects

find 3d objects operation

Author:

The operation calls the 3D objects counter plugin from Fabrice Cordelières and Jonathan Jackson.

Example

input image    output image    measurements

Description

Counts the number of 3D objects in a stack and displays the volume, the surface, the centre of mass and the centre of intensity for each object.

Options

options
min size: The minimal size of objects that will be counted.
max size: The maximal size of objects that will be counted.
display labels: When checked the object numbers will be displayed in the result images.
compute outlines: When checked an image of the outlines (surfaces) of the objectes is computed.
threshold: Only intensity values above the threshold value will be taken into account.

Parameter

The only parameter is the input image. The image must be an 8 bit or 16 bit greyscale image.

Results

Measurements (ResultsTable ) : The results table with the measurements of  the volume, the surface, the centre of mass and the centre of intensity for each object.