Help¶

Biological Image Analysis Toolsets¶

1. 3D_Nuclei_Clustering_Tool
2. Adipocytes Tool
3. MRI_Analyze_Alignment_of_Muscles_Tool
4. Analyze Calcium Signals In Spines
5. Analyze_Cardiomyocytes
6. Analyze_Complex_Roots_Tool
7. Analyze Spheroid Cell Invasion In 3D Matrix
8. Analyse Spots Per Protoplast
9. Arabidopsis Seedlings Tool
10. Artemia Tools
11. Cluster Analysis of Nuclei Tool
12. Cochlea Hair Cell Counting
13. Colony Blob Count Tool
14. Count-Axonal-Projections-Tool
15. Count Segments
16. MRI_Count_Spot_Populations_Tool
17. MRI_Create_Synthetic_Spots_Tool
18. Fibrosis Tool
19. FLIM-FRET_Volume_Tool
20. Foci-Per-Nucleus-Tool
21. MRI g-ratio Tools
22. MRI Heights of Surfaces Tools
23. Intensity-Per-Nucleus-Tool
24. Intensity-Ratio-Nuclei-Cytoplasm-Tool
25. Leaf Infection Tools
26. Lipid Droplets Tool
27. Measure Cell Surfaces
28. Measure Rosette Area Tool
29. Microtubules Tool (3D)
30. Optodes pH Analysis Tools
31. Phase Contrast Cell Analysis Tool
32. MRI_Plot_Tool
33. Retina Tool
34. Root Tools
35. MRI Root Hair Tools
36. MRI Root Shapes Tool
37. Skin Tools
38. Track_Microtubules_Tool
39. Transfection_Efficiency_Tool
40. Velocity_Measurement_Tool
41. Wound Healing Coherency Tool
42. Wound Healing Tool
43. Zebrafish Embryo Tools

Workflow and Conversion Toolsets¶

1. MRI_Convert_Nikon_Andor_To_Hyperstack
2. MRI_Convert_Opera_To_Hyperstack
3. Crop 4D Cells
4. Fill With Value Tool
5. Image Conversion Tools
6. Load-Corresponding-Images
7. MS2Quant Pre-Processing
8. MuVi-SPIM_Convert_Tools
9. MRI_ND_To_Hyperstack
10. NDPI Tools
11. Next Image As Hyperstack Tool
12. Roi Converter Tools
13. Roi Shuffle Tools

Single Plugin Tools¶

1. Align Objects
2. Batch Split Channels
3. Create Path Tool (manual tracking)
4. Discrete_Histogram_Entropy_Tool
5. Distance_Between_Minima_Tool
6. Find_and_Subtract_Background_Tool
7. Kymograph
8. Measure Skeleton Length
9. Modify Polygon Selection
10. Pad Image Names
11. Quartile Threshold
12. Separate Nuclei Tool
13. XYZ Projection Tool

Acquisition¶

1. Ovocyte Tool